Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMDS-EFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVKA
1YBY Chain:A ((31-215))
MISAGDFKNGVTFELDGQIFQVIEFQHVKPG--AAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENE--IVKVLSHKGNVFGIEPPNFVELEVTDT-------TATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYMERV--
General information:
TITO was launched using:
RESULT:
Template:
1YBY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89358 for 1198 contacts (-74.6/contact) +
2D Compatibility (PS) -18901 + (NN) 13 + (LL) 356
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -121740.0 ( -101.62 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1YBY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBY-query.scw
PDB file :
Tito_Scwrl_1YBY.pdb
: