Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLLTELLDELRHPAVRDLAWTLLAPPLLRRTPEPQRHPLAASRWRQEPERLAAWLREQERQPQHLAAWLAQWPRQRLGLYYEHLWQFALEQAPDVRLIAANLPVRDGGHTLGELDLLLRDDDGIHHLELAIKLYLGPQSGPGDWLGPGGQDRLSRKLEHLCRHQLPLAATREGRQVLAAHGAESAVSALWLSGYLFHPWPGPGSLPADIEPRHLRGRWLRQRDWPAYLASLAGPQTGQHWLHLSREHWLAPAMRRQDPLDPPRDGACWNIAFADEARPQMLVRVVPRDGYWVEAERLFLASDDWPPGLSLWGSARQAADA |
| 1Y88 Chain:A ((16-85)) | -----------------------------------------------------------------------------NLYFQGHMVARLLEEH-GFET-KTNVIVQGNCV-EQEIDVVAERDG--ERYMIECKFHNI-P----VYTGLKEAMYTYAR-------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1Y88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -12261 for 393 contacts (-31.2/contact) +
2D Compatibility (PS) -7525 + (NN) -1003 + (LL) 16480
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -7209.0 ( -18.34 by residue)
QMean score : 0.303
|
|
|