Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MWFRNLLV-YR-----LTQDLQLDADSLEKALGEKSARPCASQELT-------TYGFT-APFGKGPDAPLVHVSQDFFLISARKEERIL------PG-SVVRDALK----EKVDEIE------------------AQQMRKVYKKER---------DQLKDEIVQTLLPRAFIRRSSTFAAIAPSLGLILVDSASAKKAE-DLLSTLREALGSLPVRPLSVK--VAPTATLTDWVKTQEAAGDFHVLDEC-ELRDTHEDGGVVRCKRQDLTS--------EEIQLHLTAG-K-LVTQLSLAWSDKLSFVLDDKLAVKRLRF---EDLLQEQAEKDGGEDALGQLDASFTLMMLTF---AEFLPALFEALGGEEIPQGV---------------------------------------------------------------- |
| 3LM3 Chain:A ((13-448)) | EPLTIEGNRFVTLCIMIRTTPWEVSRDVKLHPRDEVDWHTLEGVRALREAFATNNPNGRLTWGFTMNAL-EDGRKNYREIRDYVVECQKKYGDEVTYFPGYFPAMYLPRERVNREMSEAIEIISKMVGNGYRPQSIMGGFLSADNLRYLAEKENIHVAHAVIWSQHNGGGADGSPSYPFYPSTEHFCKPAQGKSD-FIDCVNLDGWTMDFICARRSGQTGHGIDGYNSRRGVGPIETYKGW-------GLDLGHREVMHTEAIHFDKGLELNGFGWVANIWEAQMVHEFGKDLICDAMKMWVTGTKERWPDTHFVTFGEFGELWRKQYKSNDDWNYRFVERGSG------LGDSYNNLEIKWFMNKEFRLALLRDWHTKNSPAYVIDFTRYDLQAHEPADPSPEKPAKDWSLINKINQKALRPQDKPVLIDKLEKEDQDLIRKYYPELL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LM3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 141 for 2072 contacts (0.1/contact) +
2D Compatibility (PS) -30242 + (NN) -2627 + (LL) 1148
1D Compatibility (HY) -6800 + (ID) 2650
Total energy: -41030.0 ( -19.80 by residue)
QMean score : 0.043
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