Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIPHDL---------------LEADTLNNLLEDFVT----REGTDNGDETPLDVRVERARHALRRGEAVILFDPESQQCQLMLRSEVPAELLRD
3L3L Chain:A ((78-153))
-LIPHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIK------VVDRDSEEAEII------------
General information:
TITO was launched using:
RESULT:
Template:
3L3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2555 for 204 contacts (-12.5/contact) +
2D Compatibility (PS) -5918 + (NN) -3181 + (LL) 1808
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -15646.0 ( -76.70 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_3L3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L3L-query.scw
PDB file :
Tito_Scwrl_3L3L.pdb
: