Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDSVIGNHCILVNNTALAGHVHVDDWAILSGYTLVHQYCRIGAHSFSGMGSAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSSEAIHALRRAYKVVYRQGHTVEEALAELAESAAQFPEVAVFRDSIQSATRGITR
1J2Z Chain:A ((2-255))
-SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQL-LESKDIDFIYALYKRLFRPIPSLRESAKLELEEHANNPFVKEICSFILESSRGV--
General information:
TITO was launched using:
RESULT:
Template:
1J2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173284 for 2178 contacts (-79.6/contact) +
2D Compatibility (PS) -27719 + (NN) -12434 + (LL) 188
1D Compatibility (HY) -21200 + (ID) 5000
Total energy: -239449.0 ( -109.94 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1J2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J2Z-query.scw
PDB file :
Tito_Scwrl_1J2Z.pdb
: