Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPRPSLTLTLLQAREAAMSFFRPSLNQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRIQERFGEEKLAQLLELLNELKKIKP
3CDH Chain:A ((21-147))
-----------LAASSEEASAQFHDHIRAQGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA------RVRVRLTDDGRALAESLVASARAHETRLLSALADTDAARIKGVLRTLLDV--
General information:
TITO was launched using:
RESULT:
Template:
3CDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61620 for 806 contacts (-76.5/contact) +
2D Compatibility (PS) -13169 + (NN) -5123 + (LL) 616
1D Compatibility (HY) -8000 + (ID) 1450
Total energy: -88746.0 ( -110.11 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3CDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CDH-query.scw
PDB file :
Tito_Scwrl_3CDH.pdb
: