Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSFGSFSWRSPMTGTKPTTPVARYFHQEAQRRGYVLDAAQGNAILHLDRLAERLRRGPSLFRQAPRSLYLWGPVGRGKSWLMDGFFRSADLQGLRRTHFHAFFRRLHDGMFRRQGRPDALGGALDELLGDCRLLCFDEFHVHDIG---------DA--MLITRLFRELF-------------GRKITLVCTSNYAPRQLLPNPLYHERFLPAIRLIETRMEVLEVAGARDYRTISPRQEIASGYASGGYCWPASCACLDELGLSAPEPSQRVTLQSGARTLQARAVCGDLVWFAFADLCEAPTAVMDYLALGERFSTWVLEGVPPMARCSVAAQQRFINLVDVLYDNDRRFFLSAEKALPDLVEGSDLPADMQRTASRLAQLRQLRC |
1SVM Chain:A ((167-280)) | --------------------------------------------------------------PKKRYWLFKGPIDSGKTTLAAALLELCGG---KALNV-----NLPL---D------RLNFELGV-AIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -58292 for 586 contacts (-99.5/contact) +
2D Compatibility (PS) -9402 + (NN) -2243 + (LL) 19140
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -54697.0 ( -93.34 by residue)
QMean score : 0.286
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