Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
3UD5 Chain:A ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
3UD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115548 for 1133 contacts (-102.0/contact) +
2D Compatibility (PS) -16256 + (NN) -8045 + (LL) 832
1D Compatibility (HY) -16800 + (ID) 3950
Total energy: -159767.0 ( -141.01 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_3UD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UD5-query.scw
PDB file :
Tito_Scwrl_3UD5.pdb
: