Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA
3GIB Chain:A ((5-67))
-----SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPV--------------
General information:
TITO was launched using:
RESULT:
Template:
3GIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46034 for 387 contacts (-119.0/contact) +
2D Compatibility (PS) -6495 + (NN) 45 + (LL) -44
1D Compatibility (HY) -10800 + (ID) 3000
Total energy: -66328.0 ( -171.39 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3GIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GIB-query.scw
PDB file :
Tito_Scwrl_3GIB.pdb
: