Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSFVLLAFTLSLLAGCSSGPRLNTDYTSANQDS----RVQFIVLHYTSTDLPHSLGILTHGGVSAHYLI-GDDEPAT---------VYRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQGYRDTPQGRVWYP-FSEAQIQALIPLLKDIAKRH-GITPDRIIGHSDIAPGRKVDPGPLFPWKRLADAGLVPWPKPG--ELARRLAELNGQLPDVRWFQQQLARHGYLVPQTGELEKDTRDVIGAFQMKYRPARFDGEPDLETAALLLAVPTS
4BXJ Chain:B ((2-249))
----------------------LTIDYNSYRTTTPYGKRVRFLVLHYTALDFAASVKALTTGAASAHYLIPAPHDPSYKAAGFKGQRIFNLVAEEDRAWHAGVSGWARRDNLNDTSIGIEIVNLARDD--DGVFTFPDYERSQINALKQLAKNILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELYEAGIGAWYDDATRDRYREGFERDG-LPPRADLLEAFRLYGYALPATVD-DAYFASLLRAFQMHFRPENYDGALDVETAAILYAL---
General information:
TITO was launched using:
RESULT:
Template:
4BXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112074 for 1765 contacts (-63.5/contact) +
2D Compatibility (PS) -25685 + (NN) -19895 + (LL) 1636
1D Compatibility (HY) -16800 + (ID) 5250
Total energy: -178068.0 ( -100.89 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4BXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BXJ-query.scw
PDB file :
Tito_Scwrl_4BXJ.pdb
: