Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPVVLITGAAGGLGRAIAKRFAQSHWRIAATDVDKEGLHALNAQV---PLDASG-VADLRSADNCHTLMSKILARTGRLDALVNAAGVWREGPVENFTEEDFDLVLGVNLKASFYMCQAAIP---YLKENQGSIVNISSDSGRQAYRGSAAYCASKAALTMLSKTLALELAEQGVRVNAVSPADIATPMLDYQAERYG----MGNPDGYKRALLKDYPQGKAARFIRPEEVAELVWYLCGPQAEAITGADLAVDFGLSAGR
1W4Z Chain:A ((28-278))
----VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDR-ITARVPIG---RYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL----
General information:
TITO was launched using:
RESULT:
Template:
1W4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154426 for 2059 contacts (-75.0/contact) +
2D Compatibility (PS) -25976 + (NN) -11650 + (LL) 632
1D Compatibility (HY) -17600 + (ID) 4300
Total energy: -213320.0 ( -103.60 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_1W4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W4Z-query.scw
PDB file :
Tito_Scwrl_1W4Z.pdb
: