Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNINATLIGQSVAFFIFVLFCMKFVWPPVIAALQERQKKIADGLDAANRA-ARDLELAHEKAGQQLREAKAQAAEIVEQAKKRANQIVDEARDQARTEGERLK---AQAQAEIEQELNSVKDALRAQVGALAVTGAEKILGASIDANAHEQLVSKLAAEI |
1AV1 Chain:A ((90-187)) | --------------------------------LEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGA------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 19792 for 387 contacts (51.1/contact) +
2D Compatibility (PS) -10838 + (NN) -10202 + (LL) 6204
1D Compatibility (HY) -2400 + (ID) 1200
Total energy: 1356.0 ( 3.50 by residue)
QMean score : 0.592
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