Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLTDFWKTPTEKKRDEYDKLHDYLKDALKKHDEKMAEVKSDLSAYKKGMPDMPSKGIPANPFVEKNEKVLEQLEKYIDKEKDKRASLKSAIDTAYRKYLEYKALAIKEEKAEQAKKEKEKKEREERLKNG
2NPQ Chain:A ((265-314))
---------------------------------------------YIQSLTQMPKMNF-ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAY-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2NPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2366 for 232 contacts (10.2/contact) +
2D Compatibility (PS) -5494 + (NN) -5950 + (LL) 5924
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -7954.0 ( -34.28 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_2NPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NPQ-query.scw
PDB file :
Tito_Scwrl_2NPQ.pdb
: