Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNN-GL-HITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVR-NLG-KFPLPLEVIPFGWKQVERKLEKEHI----QTNLRKQSSGEVYVTNNGNYILDIVNQ-TFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANGEIELIKK
2F8M Chain:A ((12-241))
--LKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKR-NGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLNK
General information:
TITO was launched using:
RESULT:
Template:
2F8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90550 for 1865 contacts (-48.6/contact) +
2D Compatibility (PS) -24364 + (NN) -8935 + (LL) 384
1D Compatibility (HY) -21200 + (ID) 4000
Total energy: -148665.0 ( -79.71 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2F8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F8M-query.scw
PDB file :
Tito_Scwrl_2F8M.pdb
: