Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNLALWSRPVWDVEPWDRWLRDFFGPAATTDWYRPVAGDFTPAAEIVKDGDDAVVRLELPGIDVDKDVNVELD-PGQPVSRLVIRGEHRDEHTQDAGDKDGRTLREIRYGSFRRSFRLPAHVTSE-AIAASYDAGVLTVRVAGAYKAPAETQAQRIAITK
4YL9 Chain:A ((22-119))
--------------------------------------ESVIPPIDMYEEGGELVVVADLAGFN-KDKISVRLSAQN----ELIINAEREIQYIG-----TKY--ATQRPLKIHKVIRLPVKVKRDSQVTAKYENGVLTIRIPVEGSV-------------
General information:
TITO was launched using:
RESULT:
Template:
4YL9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50567 for 581 contacts (-87.0/contact) +
2D Compatibility (PS) -10259 + (NN) -3407 + (LL) 4168
1D Compatibility (HY) -7600 + (ID) 1150
Total energy: -68815.0 ( -118.44 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_4YL9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YL9-query.scw
PDB file :
Tito_Scwrl_4YL9.pdb
: