Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-METVVGLTAIAVALLIGLGALGTAIGFGLLGGKFLEGAARQPEMVPMLQVKMFIVAGLLDAVTMIGVGIALFFTFANPFVGQIAG
1C0V Chain:A ((1-79))
MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA-------
General information:
TITO was launched using:
RESULT:
Template:
1C0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60691 for 490 contacts (-123.9/contact) +
2D Compatibility (PS) -8108 + (NN) -4984 + (LL) 448
1D Compatibility (HY) -11600 + (ID) 2000
Total energy: -86935.0 ( -177.42 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1C0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C0V-query.scw
PDB file :
Tito_Scwrl_1C0V.pdb
: