Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLGVIAAAIAVGLGALGAGIGNGLIVSKTVEGVARQPEARSMLQSIMFVGVALVEALPIIAVVIAFMVLNK
2XND Chain:J ((4-72))
-AAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF-
General information:
TITO was launched using:
RESULT:
Template:
2XND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30146 for 386 contacts (-78.1/contact) +
2D Compatibility (PS) -7005 + (NN) -626 + (LL) 100
1D Compatibility (HY) -5600 + (ID) 1100
Total energy: -44377.0 ( -114.97 by residue)
QMean score : 0.083
(partial model without unconserved sides chains):
PDB file :
Tito_2XND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XND-query.scw
PDB file :
Tito_Scwrl_2XND.pdb
: