Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKPVCLVVAMTPKRGIGINNGLPWPHLTTDFKHFSRVTKTTPEEASRLNGWLPRKFAKTGDSGLPSPSVGKRFNAVVMGRKTWESMPRKFRPLVDRLNIVVSSSLKEEDIAAEKPQAEGQQRVRVCASLPAALSLLE----EEYKDSVDQIFVVGGAGLYEAALSLGVASHLYITRVAREFPCDVFFPAFPGDDILSNKSTAAQAAAPAESVFVPFCPELGREKDNEATYRPIFISKTFSDNGVPYDFVVLEK
3NZB Chain:X ((5-204))
--KSLTLIVALTTSYGIGRSNSLPW-KLKKEISYFKRVTSFVPTFD-----------------------SFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDL----------GNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDK--EWSSVWKKEKHSDLESWVGTKV----------------PHGKINEDGFDYEFEMWTR
General information:
TITO was launched using:
RESULT:
Template:
3NZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139387 for 1444 contacts (-96.5/contact) +
2D Compatibility (PS) -21145 + (NN) -9573 + (LL) 2328
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -185477.0 ( -128.45 by residue)
QMean score : 0.334
(partial model without unconserved sides chains):
PDB file :
Tito_3NZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NZB-query.scw
PDB file :
Tito_Scwrl_3NZB.pdb
: