Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNNNTTCIQPSMISSMALPIIYILLCIVGVFGNTLSQWIFLTKIGKKTSTHIYLSHLVTANLLVCSAMPFMSIYFLKGFQWEYQSAQCRVVNFLGTLSMHASMFVSLLILSWIAISRYATLMQKDSSQETTSCYEKIFYGHLLKKFRQPNFARKLCIYIWGVVLGIIIPVTVYYSVIEATEGEESLCYNRQMELGAMISQIAGLIGTTFIGFSFLVVLTSYYSFVSHLRKIRTCTSI------------------------------------------------------------------------------------------------------------------------------------------------------------MEKDLTYSSVKRHLLVIQILLIVCFLPYSIFKPIFYVLHQR---DNCQQLNYLIETKNILTCLASARSSTDPIIFLLLDKTFKKTLYNLFTKSNSAHMQSYG |
3ODU Chain:A ((44-499)) | ----------ANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAV--ANWYFGNFLCKAVHVIYTVNL----YSSVWILAFISLDRYLAIVHAT----------------NSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSE--ADDRYICDRFYPNDLW-VVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -233243 for 2108 contacts (-110.6/contact) +
2D Compatibility (PS) -28815 + (NN) 6336 + (LL) 1956
1D Compatibility (HY) -17200 + (ID) 2900
Total energy: -273866.0 ( -129.92 by residue)
QMean score : 0.238
|
|
|