Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPTLNTSASPPTFFWANASGGSVLSADDAPMPVKFLALRLMVALAYGLVGAIGLLGNLAVLWVLSNCARRAPGPPSDTFVFNLALADLGLALTLPFWAAESALDFHWPFGGALCKMVLTATVLNVYASIFLITALSVARYWVVAMAAGPGTHLSLFWARIATLAVWAAAALVTVPTAVFG--VEGEVCGVRLCLLRFPS--RYWLGAYQLQRVVLAFMVPLGVITTSYLLLL---AFLQRRQRRRQDSRVVARSVRILVASFFLCWFPNHVVTL-WGVLVKFDLVPWNSTFYTIQTYVFPVTTCLAHSNSCLNPVLYCLLRREPRQALAGTFRDLRLRLWPQGGGWVQQVALKQVGRRWVASNPRESRPSTLLTNLDRGTPG |
| 4EA3 Chain:B ((122-399)) | -----------------------------------LGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTA--TNIYIFNLALADTLVLLTLPFQGTDILLGF-WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSA----EIE---CLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRL-------EKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQ----PSSETAVAILRFC----TALGYVNSCLNPILYAFLDENFKACFRKF--------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EA3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221162 for 1932 contacts (-114.5/contact) +
2D Compatibility (PS) -26228 + (NN) -9224 + (LL) 6400
1D Compatibility (HY) -27600 + (ID) 4600
Total energy: -282414.0 ( -146.18 by residue)
QMean score : 0.279
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