Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---AC-AATTSLLACLPA--TQSDIMPSATCCTQLSSYVANNGQDCLCSASTSNTARS-----DLALKLPQKCNLKFKAGTTCNVIPGGQ
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA----DFACLCGYKNSPWLGSFGVDPELASALPKQCGLA--NAPTC-------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31636 for 402 contacts (-78.7/contact) +
2D Compatibility (PS) -6852 + (NN) -3183 + (LL) 324
1D Compatibility (HY) -3200 + (ID) 1200
Total energy: -45747.0 ( -113.80 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: