Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWMAGMLYLPRLYVYHATVKPGSESDSLLQTMERRFLRYIINPAMLFSLSFGIALMIIREAYREGWFHVKALALFFMFGIHGLLAMHRKKFAMGSNEKNHVYFRVLNEMVTVLIIIIVIMIVVKPF
1BM4 Chain:A ((1-32))
----------CAKVKGITQGPNESPSAFLERLKEAYRRYTPY------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1BM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2727 for 126 contacts (21.6/contact) +
2D Compatibility (PS) -3343 + (NN) -1542 + (LL) 10108
1D Compatibility (HY) 400 + (ID) 300
Total energy: 8050.0 ( 63.89 by residue)
QMean score : -0.142
(partial model without unconserved sides chains):
PDB file :
Tito_1BM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BM4-query.scw
PDB file :
Tito_Scwrl_1BM4.pdb
: