Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHKIKKRKLSRCTEHRLSMLKNLSISLINHEQIITTLPKAKELRPYVEKFITIAKNKNTLHGRRLLLSRLHNNKLVVDKLLNVLASRYQGCKGGYSRVMKFST-RKGDCASMAVIELVNRDVTAKGKVCDKNKEKNEVATKS
1GD8 Chain:A ((14-118))
-------------SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKR-GDLHARRLVLRDL-QDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1GD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56992 for 721 contacts (-79.0/contact) +
2D Compatibility (PS) -11559 + (NN) -5843 + (LL) 2492
1D Compatibility (HY) -10400 + (ID) 2400
Total energy: -84702.0 ( -117.48 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1GD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GD8-query.scw
PDB file :
Tito_Scwrl_1GD8.pdb
: