Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVPKKSKYRKVFKGRIKGNTKGGSTLSFGDYGLKTIEAGRVQSKHIETVRRVISRTLKRSGKIWIRIFPDTPISKKPTDVRMGKGKGSVEFWVFKAKPGRVLFEISSDVPMHLAKLALEKAMAKLPVKCKFISNYS
4IOC Chain:J ((5-132))
----KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAG-VTEEQAKEAFRLAGHKLPIQTKMVKREV
General information:
TITO was launched using:
RESULT:
Template:
4IOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39137 for 875 contacts (-44.7/contact) +
2D Compatibility (PS) -13532 + (NN) -4924 + (LL) 316
1D Compatibility (HY) -10800 + (ID) 3300
Total energy: -71377.0 ( -81.57 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4IOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IOC-query.scw
PDB file :
Tito_Scwrl_4IOC.pdb
: