Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESSVINQSEKVTKPAIDLFGCLYATGRRKESAARVWIKSGSGKFSVNQQDKLLSYFKRESVCQIVKMPLIVTSTLDKYDVFATVKGGGLSGQAGALAHGISKALSKISQDLYSILRKSGYLTRNSCVKERKKYGQRGARAKYQFSKR
2VQE Chain:I ((2-128))
--------------------EQYYGTGRRKEAVARVFLRPGNGKVTVNGQD-FNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
2VQE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55394 for 930 contacts (-59.6/contact) +
2D Compatibility (PS) -13042 + (NN) 479 + (LL) 1644
1D Compatibility (HY) -4400 + (ID) 2750
Total energy: -73463.0 ( -78.99 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_2VQE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQE-query.scw
PDB file :
Tito_Scwrl_2VQE.pdb
: