Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEQKIQAFEWFRALRDRVVESFLLIEGQSPTDPKIEKRKWDRPGGGGGESTIIY-GDVFEKVGVNISKVYGK-FADSVVNEIPGASESNGEFWASGISLVSHMQSPLVPAAHMNTRLIYTSKQ------WFGGGMDFTPTYKNEEDYKYIHESIKTTCDKFDAEYYLKFKEQCDNYFFLQHRKEPRGIGGIFYDNLNSGRWENDFEFTKAVGETFLKIYLHIIRQHMRKPWTKEQRETQLIKRGRYVEFNLLYDRGTKFGLMTDGNPDAIMMSMPPLVKWM |
| 3E8J Chain:B ((41-280)) | ---------------------------------------KWTREGGGGGRTRVIANGAVIEKGGVNFSHVYGKG-------------GCN--YQAMGVSLVIHPKNPHVPTSHANVRLFVAE--GKEPVWWFGGGFDLTPYYAVEEDCYYFHHVAQELCRPFGADVYERFKAWCDEYFFIPHRNEARGIGGLFFDDLNEWPFEKCFAFMQAVGKGFIDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILMSLPPRARWG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3E8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72165 for 1700 contacts (-42.5/contact) +
2D Compatibility (PS) -22940 + (NN) -10147 + (LL) 4204
1D Compatibility (HY) -19600 + (ID) 5450
Total energy: -126098.0 ( -74.18 by residue)
QMean score : 0.438
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