Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKVVICDDE----RIIREGLKQIIPWGDYHFNTIYTAKDGVEALSLIQQHQPELVITDIRMPRKNGVDLLNDI----ALLDCNVIILSSYDDFEYMKAGIQHHVLDYLLKPVDHAQLEVILGRLVRTLLEQQSQNGRSLASCHDAFQPLLKVEYDDYYVNQIVDQIKQSYQTKVTVSDLIQHIDVSESYAMRTFKDHVGITIVDYLNRYRILQSLQLLDRHYKHYEIADKVGFSEYKMFSYHFKKYLQMSPSDYCKQAK
3FFX Chain:B ((5-126))
-LKFLVVDDESTMRRIVRNLLKEL------GFNNVEEAEDGVDALNKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL-----------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FFX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102789 for 885 contacts (-116.1/contact) +
2D Compatibility (PS) -12423 + (NN) -8980 + (LL) 10428
1D Compatibility (HY) -11200 + (ID) 2050
Total energy: -127014.0 ( -143.52 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_3FFX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FFX-query.scw
PDB file :
Tito_Scwrl_3FFX.pdb
: