Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSG-QPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHA-DKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
1F5V Chain:B ((7-240))
-------LICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQ------LGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPD--LKPRLPASILVHENSYQPLDK----GALAQYDEQLAEYYLTRGSNNRRDTWSDHIRRTIIKESRPFILDYLHKQGWATR
General information:
TITO was launched using:
RESULT:
Template:
1F5V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104938 for 1694 contacts (-61.9/contact) +
2D Compatibility (PS) -25296 + (NN) -11326 + (LL) 1092
1D Compatibility (HY) -18800 + (ID) 4500
Total energy: -163768.0 ( -96.68 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1F5V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F5V-query.scw
PDB file :
Tito_Scwrl_1F5V.pdb
: