Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKDGIDVCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQFVKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLNTVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLERPKEQ
1YS7 Chain:B ((23-230))
-----------------LERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG--STATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAG-G-PRLLHTVRGVGFVL------
General information:
TITO was launched using:
RESULT:
Template:
1YS7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103571 for 1659 contacts (-62.4/contact) +
2D Compatibility (PS) -21998 + (NN) -9557 + (LL) 2308
1D Compatibility (HY) -16800 + (ID) 4350
Total energy: -153968.0 ( -92.81 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_1YS7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS7-query.scw
PDB file :
Tito_Scwrl_1YS7.pdb
: