Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLSTVIIILILEIVFHNMNYVNAQPDPKLDELNKVSDYKNNKGTMGNVMNLYTSPPVEGRGVINSRQFLSHDLIFPIEYKSYNEVKTELENTELANNYKDKKVDIFGVPYFYTCIIPKSEPDINQNFGGCCMYGGLTFNSSENERDKLITVQVTIDNRQSLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDGSAFESGYIKFTEKNNTSFWFDLFPKKELVPFVPYKFLNIYGDNKVVDSKSIKMEVFLNTH
3MC0 Chain:D ((2-233))
--------------------------PDPKLDELNKVSDYKSNKGTMGNVMNLYMSPPVEGRGVINSRQFLSHDLIFPIEYKSYNEVKTELENTELANNYKGKKVDIFGVPYFYTCIIPKSE-----NFGGCCMYGGLTFNSSENERDKLITVQVTIDNRQSLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDGSAFESGYIKFTEKNNTSFWFDLFPKKELVPFVPYKFLNIYGDNKVVDSKSIKMEVFLNTH
General information:
TITO was launched using:
RESULT:
Template:
3MC0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79703 for 1821 contacts (-43.8/contact) +
2D Compatibility (PS) -24684 + (NN) -12448 + (LL) 3116
1D Compatibility (HY) -33600 + (ID) 11200
Total energy: -158519.0 ( -87.05 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_3MC0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MC0-query.scw
PDB file :
Tito_Scwrl_3MC0.pdb
: