Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIALGCDHIVTDTKMRVSEFLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEQVVSGNADLGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNANVIGFGGRIIGELLMCDIIDAFINAEYKATEENKKLIAKIKHLETSNADQAD-PHFFDEFLEKWDRGEYHD
4LFN Chain:D ((1-172))
MIIAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADLGIVMCGTGIGISTAADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIVKAYLDATYKETPENKKLIDKIDNIAKPNPDQKDNPHFFDAELEKWAEGVYHD
General information:
TITO was launched using:
RESULT:
Template:
4LFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111588 for 1381 contacts (-80.8/contact) +
2D Compatibility (PS) -18302 + (NN) -5893 + (LL) 0
1D Compatibility (HY) -17200 + (ID) 4900
Total energy: -157883.0 ( -114.33 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4LFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFN-query.scw
PDB file :
Tito_Scwrl_4LFN.pdb
: