Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYSYEAFLKDSLELAKQVERLCGIPEALVCVMRGGMTLVHFLSLHWNLREVYGINAISYDTTKRQNALKIENTPTIK----DHL--KTILVVDEIVDSGNSLEAVLKVLQDKHPDKKFYSASLFQKTSAKYKADAFLKDAPEWIDFFWEVDLKNLKSH
5BQP Chain:D ((29-148))
------------------------IPDVLIAVLTGGIIPAKLLSDLLDLKVIRYIDIKFY-----RSVGKTESKPVIRSVYTDSLEGKKVLVVDDVADTGETLEAVSNVITMFNP-AKVMTAALYLKPWSKRIPDFYYKQIDKWIIFPWDKWDVVRENS
General information:
TITO was launched using:
RESULT:
Template:
5BQP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66336 for 826 contacts (-80.3/contact) +
2D Compatibility (PS) -12087 + (NN) -2943 + (LL) 2280
1D Compatibility (HY) -8800 + (ID) 2050
Total energy: -89936.0 ( -108.88 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_5BQP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BQP-query.scw
PDB file :
Tito_Scwrl_5BQP.pdb
: