Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISKEEVLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAE--SEEKTEFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEK--TPH-VLKEGVNKEEAETIKKKLEEVGAKVEVK
1DD4 Chain:B ((4-128))
-----DEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK
General information:
TITO was launched using:
RESULT:
Template:
1DD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30699 for 788 contacts (-39.0/contact) +
2D Compatibility (PS) -13064 + (NN) -5744 + (LL) 592
1D Compatibility (HY) -10000 + (ID) 3850
Total energy: -62765.0 ( -79.65 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1DD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD4-query.scw
PDB file :
Tito_Scwrl_1DD4.pdb
: