Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------MKISPSPRKLSKVSTSVSFLISFALYAIGFGYFLL----REDAPEPLAQAGTTKVTMSLASINTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKE---TKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKE---------------KDKQEESNKTSEGAT---------------SEAQAYNPGVSNEFLMKIQTAISSKN----------------------RYPKMA---QIRGIEGE-----VLVSFTINADGSVTDIKVVKSNTT------DILNHAALEAIKSAAHLFPKPDETVHLKIPI-----AYSLKED |
| 3V39 Chain:A ((1-402)) | MKVYLNSMCHMAANSKTQQIQGDDNKDDKFPLASISKVVTTLWAVDRLGPDYRFKTKLHVTPTANGSYDIHIEGSRDPLFGRNMSYFLISELNRMKITKIEKLTFDENFLLAWLAEEKPMIGGTTPKYDTVEQQASIVRATLTSSFATAISPGYYTILKTKAARIGVQMSNRPKIDVRTISFV-KKAEFQKNEKSTTMVLMSAPLKTILKRMNNQSNNYIADNLYWNLGGTEAFNAYIAGKMQADTSDIEFHNGSGNNEGSVAKPVYNEATCEMMIKVLYSLDKSLSAKGYDLSDVMAVAAKDKASTVGSYGGVMAGSTTAKTGSVNKAKTLMGSVSTKNGEIYFAVLMHTDYDKSRSDWGVASQQIKNKVSQLINQNGGPKAIKYTEQLPLPFDKYSYLTKA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V39.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 120318 for 1821 contacts (66.1/contact) +
2D Compatibility (PS) -28896 + (NN) 5573 + (LL) 104
1D Compatibility (HY) 4400 + (ID) 1550
Total energy: 99949.0 ( 54.89 by residue)
QMean score : 0.269
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