Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAEGLRTIYFVRHGKTEWNMTGQMQGWGDSPLVAEGIDGAKAVGEVLKDMQIDA--VYTSTSKRTQDTAAYILGDREIEIQPLEELKEMGFGTWEGIRVTEIDEKHPEERAKILHSPETYKAEVNGGETYYELAERLLEGVEKIIAD-NPNGNILVVSHGMSL-TLLLYLLQGGTIEDHRKEAPRILNTSISIVEYQNGEFSLKKINEIGHLDLK
1C80 Chain:B ((1-168))
----MRSIYLCRHGESELNLRGRIG--GDSGLSARGKQYAYALANFIRSQGISSLKVWTSHMKRTIQTAE-ALG---VPYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFA--LRDQDKYRYRYPKGESYEDLVQRL----EPVIMELERQENVLVICHQAVMRCLLAYFLDKSSDELPYLKCP-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1C80.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29626 for 1210 contacts (-24.5/contact) +
2D Compatibility (PS) -17853 + (NN) -7197 + (LL) 3240
1D Compatibility (HY) -13600 + (ID) 2950
Total energy: -67986.0 ( -56.19 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_1C80.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C80-query.scw
PDB file :
Tito_Scwrl_1C80.pdb
: