Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNNVNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDADELLELLMEADIDVRDILDEDGQAIIYAEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFERLIDALEDLEDVQKVYHNVELED
1KON Chain:A ((3-240))
GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKL-----DANPRLRAAVDKALSNNMTRDTLNRAIARG-----ANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAED-VVTYDDGAIDVYTAWEEMGKVRDALEAAG-LKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISD
General information:
TITO was launched using:
RESULT:
Template:
1KON.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34105 for 1778 contacts (-19.2/contact) +
2D Compatibility (PS) -24953 + (NN) -12608 + (LL) -604
1D Compatibility (HY) -11600 + (ID) 4350
Total energy: -88220.0 ( -49.62 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_1KON.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KON-query.scw
PDB file :
Tito_Scwrl_1KON.pdb
: