Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIFCGIMSIQAGFIGALAEILSPDS-KKNNLFMIPEDLA-ASSGYLMSLAMVLAGIL--------IICAYRNDFLIFMALILWLFGLIFGLIFTP-SYSGFYFRPIVCLISFLMGLFIFTDYTRHQDTGEER
3MFN Chain:A ((31-155))
AQ---EAVIEAKRYLNNAKDILRDKGGKEDGFYQDSKYVKMAGHTAYSGVLFALDHYFGKKTKGRKDVDWYKSNLAQQDKKILNTFVSVYEQLHLVMAYDGV-----GDAEVVKLGFQRAEIIIDWVERRLAA
General information:
TITO was launched using:
RESULT:
Template:
3MFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131722 for 861 contacts (-153.0/contact) +
2D Compatibility (PS) -11726 + (NN) -2108 + (LL) 780
1D Compatibility (HY) 0 + (ID) 600
Total energy: -145376.0 ( -168.85 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_3MFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MFN-query.scw
PDB file :
Tito_Scwrl_3MFN.pdb
: