Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYAEILAGGKGTRMGNVNMPKQYLPLKGKPIIVHTIEKFILNDRFEKIIIATPKDWINHTQDIIKKYI--FDSRVIVIEGGTDRNETIMNGIRYVEKEFGLNEDDIIVTHDAVRPFITHRIIEENIDMALEFGSVDTVIPAVDTIVESTNHDFITDIPVRGNIYQGQTPQSFNMKTIQKHYNNLTDDEKQILTDACKICLLAGEKVKLVNGGISNIKITTPYDLKVANAIVQERINS
2VSI Chain:B ((2-233))
MIYAGILAGGTGT------LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMI------
General information:
TITO was launched using:
RESULT:
Template:
2VSI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124027 for 1777 contacts (-69.8/contact) +
2D Compatibility (PS) -23794 + (NN) -7067 + (LL) 588
1D Compatibility (HY) -26800 + (ID) 5950
Total energy: -187050.0 ( -105.26 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2VSI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VSI-query.scw
PDB file :
Tito_Scwrl_2VSI.pdb
: