Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFDDNKERVIQEYVPGKQVTLAHLIANPNRDIYTKLGLEEG---ASAIGILTITPSEASIIASDIATKSGDVRIGFID-----RFSGSVVLTGDVSSVESALQQVVFSLHEILDFSIPKITRS
3NWG Chain:A ((65-167))
----------------AHSVLDDFILPNVHPQVLTAISAATPLTLIKALGIIETFSIASLIVAADTAAKTGQVDLVEIRIGMGIGGKSFVTLTGDVASVESSVAAGVMLASERGMLVDK-----
General information:
TITO was launched using:
RESULT:
Template:
3NWG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41925 for 709 contacts (-59.1/contact) +
2D Compatibility (PS) -10280 + (NN) -3848 + (LL) 1504
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -59849.0 ( -84.41 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_3NWG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWG-query.scw
PDB file :
Tito_Scwrl_3NWG.pdb
: