Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVIRKFCTYQKLRVKAFTLLECLVALVTITGALLVYQGLTKLLAQQIVVMSSSSQSEWVLLTQQLNAEFEGAHLEYLRQNKLYLRKQDKIVTFGKSNKDDFRKTGYDGRGYQPMVYGLDNCQMSQTKSMVKLVFYFKDGLKRTFYYDFKEET
3Q87 Chain:A ((1-125))
------------MKPFLLGLLKCKRC-----------SFMTKLILECEKAESNDVDVK--IFNKHMFTENGGERLKSLVNS---LRDFHGR-ELSEQDISSFVENPGDDEKIKEFLFGIDVVEGSLRCDMCGLIYPIKGSIVET--VDTVESK
General information:
TITO was launched using:
RESULT:
Template:
3Q87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27080 for 871 contacts (-31.1/contact) +
2D Compatibility (PS) -12538 + (NN) 1868 + (LL) 3728
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -41622.0 ( -47.79 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_3Q87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q87-query.scw
PDB file :
Tito_Scwrl_3Q87.pdb
: