Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEKLLVPALNCLLGLLFLGDHWFLFRLQNGELFAIVTLILLCTTSFLINKNHPKNLTLISMIITFLAVLSFLSTFLLA
1HNX Chain:V ((1-24))
-----------------GKGDR----RTRRGKIWRGTY-----------GKYRPRK-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1HNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4764 for 123 contacts (38.7/contact) +
2D Compatibility (PS) -2505 + (NN) -299 + (LL) 6644
1D Compatibility (HY) 1200 + (ID) 300
Total energy: 9504.0 ( 77.27 by residue)
QMean score : -0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1HNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HNX-query.scw
PDB file :
Tito_Scwrl_1HNX.pdb
: