Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFENIIYGIDGNVATIMLNRPDISNGFNIPMCQEIIDAIRLVSENKDVMFLVIEAQGPIFSIGGDLKVMKAAVESDDISSLTKIAELVNQISYDLLQLEKPVVMCVDGAVAGAAANIALAADFVIASKKSKFIQAFVGVGLAPDAGGLLLLSKSIGITRAVQLALTGESLSAEKAEALGIVYKLCESDKIGKIKDQLLKRLSRHSINSYQAIKSLAWEAAFKDWEQYKKLELQLQESLAFKQDFKEGVRAHADRRRPNFLGK
3P5M Chain:E ((13-255))
----------DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGG---GGDT----------AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFRGH
General information:
TITO was launched using:
RESULT:
Template:
3P5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160505 for 2030 contacts (-79.1/contact) +
2D Compatibility (PS) -26744 + (NN) -11133 + (LL) 1708
1D Compatibility (HY) -5600 + (ID) 3850
Total energy: -206124.0 ( -101.54 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_3P5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P5M-query.scw
PDB file :
Tito_Scwrl_3P5M.pdb
: