Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------MINDKNRY---RGSLLAQSILKEKVTR-TVTKDEMLETVNLDYRRLIIIQLVSIAFGG----MAIWCLIALVLLTVVGILICS---------LHNDLP------FVTAIPIESPIKMIWLEGWQ-----------------INVAIGLIGTFGIFLDKWATNKMDALREATD-------KKQLTKDYL----AWKEEHNG
4OHC Chain:A ((10-230))
TGYDRQSISDTTAKILLEVQAVHFNAEKPFIFTSGWASPVYIDCRKLISYPRVRRALMEMAETTITRDIGFEQIDAVAGGETAGIPFAAWIADRMMVPMQYVRKKPKGFGRNAQIEGHLEEGSRVLLVEDLTTDSRSKINFVNALRTAGATVNHCFVLFHYNIFKESVSVLKDIDVDLHALAT-WWDVLRVAKASGYFETKTLDEVEKFLHAPAEWSAAHGG
General information:
TITO was launched using:
RESULT:
Template:
4OHC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82385 for 943 contacts (-87.4/contact) +
2D Compatibility (PS) -16127 + (NN) -6100 + (LL) -80
1D Compatibility (HY) -6400 + (ID) 1300
Total energy: -112392.0 ( -119.19 by residue)
QMean score : 0.169
(partial model without unconserved sides chains):
PDB file :
Tito_4OHC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OHC-query.scw
PDB file :
Tito_Scwrl_4OHC.pdb
: