Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEKYGVPRDIYAK----------VKIIGLVIAD--------IVFVGGSAVAALSIGTRIFPTNQWPQLVAFMILTPL--------MCLYLVLPTNGGKKNWHSMFLFFRRRRKRYISLNYQRRENR
4JOI Chain:C ((1-118))
MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKLVEPFHAQVGSLYIVLGELQHQQDRGSVVKARVLTCVEGMN---------LPLLEQAIREQRLYKQER
General information:
TITO was launched using:
RESULT:
Template:
4JOI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65331 for 594 contacts (-110.0/contact) +
2D Compatibility (PS) -10543 + (NN) -5709 + (LL) 872
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -83411.0 ( -140.42 by residue)
QMean score : 0.129
(partial model without unconserved sides chains):
PDB file :
Tito_4JOI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JOI-query.scw
PDB file :
Tito_Scwrl_4JOI.pdb
: