Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFA-KEYPTTVLLVSLTTLVFLLMQLTYGSQAESSQVIFQFGGIQGDYLKAYPTNLWRLISPIFVHIGWEHFLLNGLALYFVGQMGESIWGSLRFLILYILSGLMGNIFTLFFTPHVVAAGASTSLFGVFSAIAIAGYFGKNPYLKQVGKSY---QVMILLNLFFNIFTPGVSLAGHVGGLVGGVLVAIFLTKQNGSLLFKTWQSILALMIFIIVSISLIGLSLV
2NR9 Chain:A ((4-191))
---FLAQQGKITLILTALCVLIYIAQQLGFED---DIM---YLMHYPA-YE-EQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG-PAFFGLSGVVYAVLGYVFIRDKLNHHLF-DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKNSLELVP----------------------
General information:
TITO was launched using:
RESULT:
Template:
2NR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138752 for 1462 contacts (-94.9/contact) +
2D Compatibility (PS) -18445 + (NN) -4484 + (LL) 4136
1D Compatibility (HY) -18800 + (ID) 2000
Total energy: -178345.0 ( -121.99 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_2NR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NR9-query.scw
PDB file :
Tito_Scwrl_2NR9.pdb
: