Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLQENKTAIFDNVSKLALKAGR-----APESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEKYQALKDEKLTWHLIGSLQRRKVKDVIN--YVDYFHALDSVKLAAEIQKR------AQKPVKCFLQVNISREDSKHGFTIEQ-IDDALNLI--SRYDKIELIGIMTMAPLKATKEEISSIFEETESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFFK
1CT5 Chain:A ((6-245))
-YDEDRKTQLIAQYESVREVVNAEAKNV---KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLP-DDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSW-------NRDFATLVEWKKKIDAK-F--GTSLKLSMGMSADFREAIRQGTAEVRIGTDIFG
General information:
TITO was launched using:
RESULT:
Template:
1CT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141118 for 1658 contacts (-85.1/contact) +
2D Compatibility (PS) -22232 + (NN) -4127 + (LL) 1100
1D Compatibility (HY) -16000 + (ID) 3100
Total energy: -185477.0 ( -111.87 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_1CT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CT5-query.scw
PDB file :
Tito_Scwrl_1CT5.pdb
: