Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKIKIVTDSSITIEPELIKELDITVVPLSVMIDGTLYSDNDLKAQGEFLNLMRGSKELPKTSQPPVGVFAEIYEKLMNEGAEHIIAIHLTHTLSGTIEASRQGANIA-----GADVTVIDSTFTDQCQKFQVVEAAKLAKEGADLDTILARVEEVRQKSELFIGVSTLENLVKGGRIGRVTGLLSSLLNIKVIMEL-TNHELVPIVKGRGLK-TFSKWLDNFVESAQTRKIAEIGISYCGKADMANNFKEKLAV--LGAPISVLETGSIIQTHTGEDAFAVMVRYE |
| 3FDJ Chain:A ((3-277)) | --AMRLVADSACDIKEL--RGMVFKAVPLTISTDNEEFCDDGQLDIHRMLDILEKHKGRSYTACPGIDAWLEAFG----D-DDEIFVVTITAGMSGTYNSAMAARAVYLEEHPQAKVRVIDSKSTGPQMRIILEQLQQMIEEGKKFEEIDGAIDAYMQKTRLFCSLKSLHNLAQNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGDKKLLVKLQALLDDA--GYEGGKLRICHVENEALADKIADMIKQAYGTTDVCVYKAGGLCSYYAERGGIILSCETK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FDJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107738 for 2289 contacts (-47.1/contact) +
2D Compatibility (PS) -29763 + (NN) -14532 + (LL) 1020
1D Compatibility (HY) -15600 + (ID) 2700
Total energy: -169313.0 ( -73.97 by residue)
QMean score : 0.488
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