Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFFPNIDNIIKNYIKEMITHSDIPDLQKQLETAYQVPYSFALGIYISTIESIILNWIDHDFTEEPEEIARYITSVVRI
3VIB Chain:A ((157-196))
-----------------------------------LDKETAVIFIKSTLDGLIWRWFSSGESFDLGKTAPRIIGIMMD
General information:
TITO was launched using:
RESULT:
Template:
3VIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8946 for 179 contacts (-50.0/contact) +
2D Compatibility (PS) -4082 + (NN) 424 + (LL) 2716
1D Compatibility (HY) -2400 + (ID) 350
Total energy: -12638.0 ( -70.60 by residue)
QMean score : 0.233
(partial model without unconserved sides chains):
PDB file :
Tito_3VIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VIB-query.scw
PDB file :
Tito_Scwrl_3VIB.pdb
: