Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLIIGIFSLIIIAILAWQGFSFLKHKEIKLQQAVVEKEIRIAEKTVEVVKRQKTERVLFLEPKGYDKSLSADILKWNQKSFEHKKFYDNQYIILRPQLADSNFANVKKLSIYQILYQKEKGSMFQKSSRLLRTYLLDQNKKPFELDELLAHNISGFKAILENIAPGTQLKEHDSNKEFLKTGRVTDGLDVKDGKLIINDLKLPLDKLYNVIDESYLKSSDLDLVSNLKAKAPRVALTFDDGPNEKTTPKALEILKRYNAKATFFVMGQSAVGHTDILQRMHAEGHEIGNHTWDHPNLTKLPAEKIKEEIHKTNDLIMKATGQKPVYLRPPYGATNATVKTVT---GLKEMLWSVDTEDWKNHNTQAMMTN----IKKQLRPGG-VILMHDIHQTSIDALP-TIMDYLITQGYYFVTVGELYSTP |
2Y8U Chain:B ((35-220)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IALTFDDGPSEYT-PQLLDLLSRYSARATFFVLGDAAAQNPGLLQRMRDEGHQVGAHTYDHVSLPSLGYDGIASQMTRLEEVIRPALGVAPAYMRPPYLETNELVLQVMRDLDYRVISASVDTKDYENQDADAIINTSFQLFLDQLDAGGNIVLAHDIHYWTVASLAERMLQEVNARGLIATTVGDCLGDG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y8U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -70229 for 1447 contacts (-48.5/contact) +
2D Compatibility (PS) -19018 + (NN) -7315 + (LL) 18444
1D Compatibility (HY) -15200 + (ID) 3600
Total energy: -96918.0 ( -66.98 by residue)
QMean score : 0.392
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