Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKSKKIENYQLLLLQAQALFSDETNALANLSNASAMLNAMLPNSVFTGFYLFDGKELILGPFQGGVSCVHITLGKGVCGESAQTAKTLIVDDVTKHANYISCDSKAMSEIVVPMFKNGKLLGVLDLDSSLVADYDEIDQEYLEKFVGILVEHTIWNLDMFGVEK
3RFB Chain:B ((7-167))
MLKSEKQSRYQMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGKELVLGPFQGGVSCIRIALGKGVCGEAAHFQETVIVGDVTTYLNYISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAILLEKTTWDFTMFEE--
General information:
TITO was launched using:
RESULT:
Template:
3RFB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97945 for 1254 contacts (-78.1/contact) +
2D Compatibility (PS) -17588 + (NN) -7299 + (LL) 20
1D Compatibility (HY) -20800 + (ID) 5200
Total energy: -148812.0 ( -118.67 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3RFB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RFB-query.scw
PDB file :
Tito_Scwrl_3RFB.pdb
: